Sentence examples for dependence on alignment from inspiring English sources

To assess the dependence on alignment depth, we generated paired sub-alignments with varying numbers of sequences for every pair of 50S proteins and recomputed coupling strengths for each sub-alignment.

Otu and Sayood [ 70] formally examined C LZ as a new sequence distance measure for phylogenetic tree construction, and demonstrated that its lack of dependence on alignments or evolutionary models was particularly suited for sequences subject to segment-based modifications, including whole mitochondrial genomes of eutherian mammals.

They thus suffer from relying on fragile fiber tapers, angled-polished fibers, coupling prisms, etc. with a critical dependence on their alignment.

We report that the erosive wear performance shows strong dependence on the alignment geometries of CNTs within the epoxy matrix under identical nanotube loading fractions.

The approximately scale-free EVcomplex score is a heuristic based on the distribution of raw EC scores from the statistical model, their dependence on sequence alignment depth and the length of the concatenated sequences.

This measure of variation does not show any dependence on the alignment length but tends to increase for genes with lower conservation ranks (probably because of the trivial fact that all the values are within the 0 1 range).

The choice will depend on alignment.

The complexity in choosing aligner settings and the potential for missing alignments makes the case against dependence on primary alignments.

Microvessel alignment is another parameter that existing programs have not measured, despite a strong dependence of performance on alignment in some tissues.

Results on both simulated datasets and Drosophila cis-regulatory modules demonstrate how removing the traditional dependence on a single alignment increases the accuracy of functional element predictions.

A dependence on a single alignment may be particularly harmful when searching for regulatory motifs, such as transcription factor binding sites (TFBS), which are difficult to align reliably due to their short lengths (6-15 nucleotides) and tolerance of degenerate nucleotides [ 7].