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Given that call rate and accuracy of resequencing microarrays depend on divergence between tiled and hybridized sequences [11], we sought to demonstrate and quantify the improvement of microarray performance when tiling ancestral sequences.
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These relationships may also hold true for other non-model plants, depending on divergence between the species used for data acquisition and as genome reference.
It strongly depends on divergence of genotypes (or even species) used to produce reads and reference sequence and also on quality of sequence reads and reference used for alignment.
The specific dates of the last two divergences depend on the divergence time chosen for the crown bilaterian (tables 5 and 6 and supplementary tables S4 and S5, Supplementary Material online).
The insertion order/rank method does not directly depend on sequence divergences but instead depends on the RepeatMasker program to properly assign repeat subfamily (Giordano et al. 2007).
It appears that in hybrids, the characteristics of the transcriptional response to genome merger depend on genetic divergences between the parental species and their evolutionary history.
The characteristics of the transcriptional response to hybridization appear to be determined by the compatibility of gene regulatory networks and therefore depend on genetic divergences between the parental species and their evolutionary history.
The beam divergence depends on the divergence of the input fiber as well.
The ratio of the two reflector voltages resulting in best performance is a constant for both instruments, but while the absolute values have to be adjusted to the ion beam parameters in the case of the gridded reflector, they only weakly depend on diameter and divergence of the ion beam in the case of the gridless reflector.
On the whole, this decline of conservation appeared exponential as a function of evolutionary distance and did not necessarily always depend on time of divergence alone.
Unlike that observed in less stressful conditions, the fitness of heterozygotes did not depend on the genetic divergence between their parents.
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