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In such regions, erroneously aligned ultramicro inversions would possess high density of mismatches and gaps.
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We then used FLASH [ 21] version 1.2.11 with a mismatch density of 0.15 (− x 0.15) to overlap the trimmed reads.
These estimates of mismatch density are in the same order of magnitude as SNP density estimates observed in other studies: Parchman et al.[ 72] reported between 0.6 to 1.1 SNPs per 100 bp in Pinus taeda, depending on the stringency of their filtering criteria.
It has been shown that hetero epitaxy of InN films on sapphire or Si often results in a high density of threading dislocation, due to the mismatches in lattice constant and thermal expansion coefficient.
The calculation of mismatch density in window of 5 10 Kb in 400,000 random samplings confirmed the bimodal distribution: distribution A and B separate at 1.5 1.8 mismatches/Kb and about 15.3%18.7%% of genomic sequences belong to Group-B and Table 2).
The precise density at which neighboring differentiating sites became problematic depended on the number of mismatches allowed during the alignment of sequencing reads.
This mismatch induced large density of dislocations in the grain boundaries in the vicinity of the nanotube-matrix interface, which obstruct the crack propagation.
The kind of mismatches they can create is a nightmare".
There's lots of mismatches.
described indicate number of mismatches allowed.
bnumber of mismatches between the two repeats.
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