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Transmembrane domains were predicted using two distinct algorithms: TMpred and Dense Alignment Surface (DAS) methods [ 63]; only genes with transmembrane domains predicted by both algorithms were reported.
Although genetic maps [ 25, 26] also provide long range data that were used to align the turkey sequence scaffolds along chromosomes, their resolution is limited by marker density and/or linkage disequilibrium, and, in our experience, they are less accurate than a comparative map based on dense alignment of BACs using BES and/or overgo hybridization, along with BAC fingerprint contigs.
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The segment (35%) at the top of group F had a dense contiguous alignment spanning the initial 28% of Mt-2.
The similarity in predicted secondary structure of SEPs is shown for selected SEP sequences from the three major lineages of Plantae, i.e. glaucophytes (C. paradoxa), red lineage (G. sulphuraria) and green lineage (A. thaliana) in Figure 3B, using the Dense Surface Alignment (DAS) algorithm [ 29].
Green box (21,500,000 24,800,000 bp) highlights a 3.3 Mb region harboring dense Rmap alignments.
Prank is very conservative in detecting homologous positions and thus this relatively low cut off already provides dense high quality alignments.
Coarse rigid transformations determined in this step enable fine alignment with dense, unfiltered point clouds or using Iterative Common Point (ICP) alignment techniques.
The proposed pipeline guarantees a highly reliable alignment of dense range image datasets on a variety of objects in few seconds per million of points.
However, the vertical alignment of dense CNT forests, which were synthesized in base-growth model, was also observed in a PECVD process.
Possible dust alignment in dense regions due to paramagnetic anisotropy ΔχPARA is discussed based on the results of a laboratory experiment on ortho-pyroxene grains containing a small amount of Fe2+ ions (1.8 mol%).
Applying stretching and pressing is effective for production of superior CNT sheets with high alignment and dense packing of CNTs, thereby supporting the development of high-performance CNT composites.
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