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Followings are the actual steps to build the dendrogram: 1.
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On the basis of dendrogram 10 variables can be grouped into two main clusters in both the seasons.
To shed light on the status of pKF3-70 in the evolution of Enterobacteriaceae plasmids, we used a gene-content method to construct the phylogeny dendrogram [30].
The topological overlap measure (TOM), which assess the degree of shared neighbors between pairs of genes, was calculated based on the adjacency matrix and was used as input for the gene dendrogram (1-TOM).
A PFGE cluster was defined as >3 isolates sharing >80% similarity on the dendrogram (25, 26 ).
In Figure 4 we show the most relevant partitions: we consider 3 clusters (top left dendrogram), 8 clusters (top right dendrogram), 12 clusters (bottom left dendrogram) and 19 clusters (bottom right dendrogram), respectively.
In this dendrogram, 8 genotypes were appeared to form four major clusters at distance level 10.5.
A PFGE-based clonal group was defined as isolates with a ≤3-band difference (12 ) and/or ≥80% genetic relatedness on dendrogram (8 ).
By putting them on a number axis, we group all the candidate measures agglomeratively based on their distances on the axis, forming a dendrogram D g1 g2).
Strain relationships were inferred by use of the Pearson product-moment correlation coefficient and unweighted pair-group with mathematical average (UPGMA) clustering and depicted in a dendrogram (16 ).
The dendrogram formed with the band pattern of the different gastrointestinal tracts of pigs fed with a CT diet was shown in Figure 2. In this dendrogram, 2 clusters were observed depending on the day of sacrifice.
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