For this revision, we merely deleted a procedure that did not apply to this AFI.
This was shown using a novel regress-delete-regress procedure outlined in Materials and Methods (we were able to directly test the sensitivity to 〈k〉, rather than using a Monte Carlo approach as above, because the strong correlation of m with n provided a baseline from which we could quantify deviation of 〈k〉 from constancy).
Removing the mappings between the InterPro identifier and GO term in these cases would result in a large number of valid annotations being deleted, so procedures to handle the small number of inaccurate annotations are invaluable.
One possible solution to this problem is resampling; for example, one can use a delete-d-jacknife procedure in which a subset of data is excluded to find out the frequency of selecting a particular gene as differentially expressed [ 18].
This procedure deletes from the list of stored models, modelsOcc, a valid model m when the result of its extension with a symbol α, mα, is also a valid model and the set of node-occurrences of mα, Occ mα, has as many genes as the set of node-occurrences of its father m, Occ m.
We repeated this same procedure but deleting edges rather than nodes: edges were deleted at random or in order of decreasing connection distance, i.e. attacking the longest edge first.
This procedure involves deleting variables to a desired degree of accuracy based on contribution to model R. We will compare the reduced and full models using internal bootstrap validation, with appropriate penalisation for the variable selection.
In the deletion model, as outlined in Figure 3C, the gene is deleted during haploidization procedures producing a null allele that is not present in the diploid.
Officials at social media companies, speaking on the condition of anonymity to avoid offending political leaders, said that they were moving as fast as they could but that policy makers must realize that the company officials have to follow their own internal procedures before deleting content and revealing information like the Internet protocol addresses of users.
Under this scenario, the recommended method for calculating the variance is the delete-a-group jackknife procedure [20].
