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As consequence, the number of "labrum only" (i.e. labrum but no other structure affected) phenotypes dropped to 30% but the labrum remained the most frequently deleted structure (40%).
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Interestingly, 24% of the strong interactions in the native RIN were weakened relative to the RIN of the mutant lacking the β-hairpin, 22.6% relative to the mutant lacking the α-helix, and 23.3% relative to the mutant lacking both, suggesting that interactions between nodes that are not part of the deleted secondary structure elements were consistently weakened in the absence of these elements.
Analysis of the mutation-induced perturbation of the non-covalent interaction RIN of the native PapC TD in the absence of the β-hairpin, α-helix, or both, shows that the interactions between nodes that are not part of the deleted secondary structure elements are consistently weakened.
When SGS1 is deleted, these structures cannot be dissolved.
User can save or delete a structure easily or even import one from the desktop with the help of these options available in File menu.
Furthermore, by pressing the Shift key the user can prevent the delete operation from removing terminal ("orphan") atoms when a bond is deleted (Figure 3, structure c).
If iCon > valence, the longest single bond is deleted, and the structure is checked again until iCon is no longer larger than the maximum valence.
The positions identified by the eigenorganisms include entire substructures inserted or deleted in the structure of one taxonomic group relative to another.
First, residues 419 422 were deleted from the structure to create a gap ready for bridging by four residue fragments from the LoopX database.
For the construction of in silico stabilized library mimics (stem(0) and stem(5)), residues 419 422 were deleted from the structure.
If pseudoknot base pairs are included in the extracted structure, pseudoknot base pairs were deleted from the extracted structure before the performance evaluation.
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