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Since P o denotes the average conservation rate of a motif m, we scan 5000 random heptamers in the genome and calculate its conservation as per the degeneracy profile of m.
This conservation score is then used to compute the average conservation rate for a motif whose degeneracy profile is the same as m (See Additional file 1 for details).
Similar(58)
Moreover, the authors suggest that the differences in electrophysiological properties found between visually-stimulated and early stages of development for similar spiking profiles also demonstrate degeneracy of electrical phenotype.
The mismatch and deletion states in the HMM profiles of the PFAM templates account to the degeneracy due to evolution and the secondary structural information of the match states in the HHM profiles contribute to the structural part.
Altogether, the work of Ratté et al. demonstrates that excitability disorders such as neuropathic pain rely on the degeneracy of excitability, with numerous ion channels defining the excitability profile of the neuron.
The next question we ask is whether, given this degeneracy among enzyme time courses, we may expect the cell to use a specific enzyme profile in time.
Motif instance data are often noisy because of redundancy and degeneracy in PSSMs, and in genome-scale expression data sets many genes may share expression profiles, but not regulatory dynamics.
Here's why... Degeneracy is the word.
We've got quality and degeneracy".
I'm all for degeneracy if it's creative.
And a certain kind of degeneracy that's not creative.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com