Sentence examples for defining branches from inspiring English sources

Furthermore, the MIRU-VNTR tree-based analysis was highly congruent with deligotyping and/or spoligotyping results for defining branches within the Euro-American superlineage and its LAM component.

In addition, the phylogenetic approach also indicates that the pathogenic status proposed for various mtDNA mutations, which actually define branches of Native American haplogroups, was based on insufficient grounds.

To clarify whether positive selection is linked to the evolution of heterophylly or homophylly, the branch-site models implemented in PAML ver. 4.1 (the modified branch-site model A) [27], [48] used heterophylly or homophylly to define branches tested for positive selection (foreground branches).

Unlike the branch-site model in codeml, this method does not require to define branches under selection a priori[ 78].

The dynamic tree cut method was applied to define branches as co-expression modules (minClusterSize = 40) [ 53].

Exclusive rooting defines branches as derived and thus they are omitted until only the root is left, thereby establishing LUCA.

This dendrogram defines two vertically defined branches that discriminate absolutely between the non-proliferating Rasless cells and proliferating, control K-Raslox and the BRAF- or MEK1-rescued cells.

It should further be noted that within the Physcomitrella sequences, the four above described hexokinase types form well-defined branches suggesting a distinct origin for each type.

While the different actin isoforms of H. sapiens and D. melanogaster, respectively, build defined branches, most P. tetraurelia actins are isolated and scattered throughout the tree.

Hierarchical clustering defined branches of the cluster dendrogram in 13 color-coded modules (Fig.  3a) ranging in size from 35 to 339 genes (average size of 127 genes).

Their model notably differs from the BSM (Zhang et al., 2005) in that putative positive selection is not optimized on a priori defined branches, but over a subset of branches which are determined by the software.