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We define a site to be occupied (from a given ant's perspective) if the amount of stimulus in a site if greater than the threshold of the ant.
The stereotypic position of this ganglion and the lateral branches of the afferent axons towards the neuromasts allowed us to precisely define a site of axonal cuts between samples (Fig. 6B).
Let S denote the set of possible substructures, We define a site's structural entropy to be where is the frequency of site i being in substructure of type s.
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We defined a site as CGI or non-CGI if both CGI definitions were in agreement.
Since there is extensive 3′ end heterogeneity in plant transcription units, and given that the EST-derived poly(A) sites define a single site for each corresponding gene, this spatial correspondence between ESTs and PACs indicate that PACs effectively recover the 3′ ends of cloned cDNAs.
We define a variant site as a site at which at least one alternate allele is detected from among all samples in the exome chip data.
Following [ 26], we define a predicted site as a 'true positive' result if it overlaps the true site by at least a quarter of the true width.
These binding sites define a set of potential Autonomously Replicating Sequences (ARSs), which we term nimARSs.
Residues that make a significant contribution are mapped onto the protein sequence and are used to define a "binding site signature" for the complex being considered.
Conversely, we define a binding site as having been disrupted by a risk allele if ψ R/ψ max < 0.75 and ψ NR/ψ max > 0.85.
In this study of protein-DNA interactions, we considered three types of interactions to define a binding site: hydrogen bonds, water bridges and hydrophobic interactions.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com