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In treating the dynamics of these reactions, it becomes clear that knowledge of the molecular conformation alone is not sufficient to define a reaction coordinate (since the nuclei may not more appreciably during the course of the reaction).
I define a reaction constraint graph whose nodes are individual reactions.
We define a reaction as essential for viability if its elimination abolishes viability in a given chemical environment.
We represent metabolic pathways as directed hypergraphs and define a reaction similarity score based on both compound and enzyme similarities.
Finally, we conclude in Section 5. We define a reaction network 〈ℳ, ℛ〉 by a set of molecular species ℳ and a set of reaction rules ℛ.
For example, reaction rates differ with the dose and technique used, the allergen used, and the definition applied to define a reaction.
Similar(51)
Analysis of reaction products helps defining a reaction mechanism and ensuring absence of any mass and heat transfer limitations.
In the literature there are several approaches to defining a reaction similarity score.
We defined a reaction as essential for survival when basically the mutated network could not yield the products of the reaction from upstream substrates of the reaction.
The reactions for Smo production and decay, Reactions 2 and 7, are shown here: Reaction Smo_production 0.002 pro Smo inh Ptc1 5 2 1 1 0 0 Reaction Smo_decay 0.002 sub Smo The keyword 'Reaction' defines a reaction definition.
For example, if the modeler defines a reaction like "-> A", then s/he is implicitly saying that a species A should exist in the model.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com