"Furthermore, generic exposure scenarios can be selected containing default release factors and assumptions on implemented risk management in the processes"[21].
We searched annotated protein databases for the presence of DEG7 orthologues using the BLAST algorithm [ 25] with default parameters as implemented on the web pages of the National Center for Biotechnology Information (NCBI, http://www.ncbi.nlm.nih.gov/blast), The Gene Index Project (TGI, http://compbio.dfci.harvard.edu/tgi/), and the Joint Genome Institute (JGI, http://genomeportal.jgi-psf.org/).
Domain predictions were performed at the level of the whole proteome, across all 131 species on a parallel computing platform using profile hidden Markov models (HMMER 3.0 [ Eddy 2011] with default parameters as implemented in PfamScan [ Punta et al. 2012]).
The default was implemented in December 2008, two years after Correa was elected President.
MP trees were built with default setting implemented at MEGA4.
Other parameters of the docking protocol corresponded to the default values implemented in the GOLD program.
28S sequences were first automatically aligned using MAFFT v.6.705 [44] with default parameters, implemented in SeaView v.4.1 [45].
While data are still scarce on the impact of implementing a default option since 2010, behavioral economics predicts that the application of default bias may move the needle toward reducing vertical transmission of HIV through breastfeeding.
Based on experiences from implementing openness, we suggest complete openness as the new default, deviation from which should be explicitly argued, in assessment and policy making upon issues of environment and environmental health.
The default, implemented here, is to return 1.0.
For the other settings, default values were implemented.
