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When searching car listings on CarGurus, for instance, the default distance the tool uses is 75 miles — about an hour's drive.
The default distance between the molecule and cage is 3 Å, as this resembles a non-bonded average distance between the receptor and ligand.
Once launched, the application generated 'holographic' overlays, correctly rendered for both left and right eyes, at a default distance and rotation with respect to the wearer's coordinate frame.
A user could one day manually set it to, say, 1 mile, but that is not available in the system right now, although Davies says it could be added, or the default distance changed.
Unless you have an iPhone 7 Plus, which has up to a 2x physical zoom, digitally zooming in on a picture doesn't make it any bigger, all you're doing is pre-cropping a photo that's been taken at the default distance for your camera.
Then, ideally, you repeat this 14-10-6 (or your equivalent) set three times per day, each time adjusting the difference between the two handles to either REALLY FAR APART (ouch, those hurt a lot), REALLY CLOSE TOGETHER (wow, that's a different kind of pain altogether) or JUST SORTA AT THE DEFAULT DISTANCE (eh, these aren't so bad).
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The default distances are 5000 bp both up- and downstream; however, users may be interested to determine whether there are TFBSs enriched predominantly in upstream regions that differ from TFBSs enriched in downstream regions.
If there are any such atom pairs whose bond distances are approximately within the default bond distance (see Appendix 1) then all of these pairs are joined by adding a single bond between each pair.
The simulation started with a single flock of randomly positioned individuals in a small volume of space, at an approximately default average distance to the nearest neighbours.
Otherwise, DSDV resorts to its default hop distance metric.
If there are unbonded pairs, but none of them are close enough to the default bond distance, then only the closest pair of atoms is connected.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com