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UniProt (22) and GenBank were used as the default databases to search unless the species was known to have been sequenced by one of the major sequencing centers.
This is recommended if you work frequently with non-UCSC data sources, such as the model organism databases or Ensembl, and is how the default databases on the Amazon and VirtualBox VMs were created.
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Eventually I accepted an invitation to Gmail, with its oodles of storage and very granular search function, and it has oddly become my default database — deep, rich and personal.
At that point, the default database choice for Ruby was MySQL.
After its initial release in 2012, developers quickly got excited about Meteor, largely thanks to its ease of use (you can write both your front-end and back-end code in JavaScript, and the framework comes bundled with MongoDB as its default database) and focus on real-time applications.
A possible source of error is that PubMed is our default database for searching.
A default database is included but there is also flexibility to use a bespoke, user-generated transcript database.
To identify and eliminate common CNVs from the study, we used default Database of Genomic Variants (http://www.openhelix.com/) for hg18.
The default database display is by genomic position of each sequence variant (5′ to 3′) within the SPRED1 gene.
The default database is displayed according to the location of the sequence variation (5′ to 3′) within BTD. Figure 1 shows the database display columns Location, Mutation Type, Nucleotide Change, Protein Change, Classification, Phenotype, References, and Comments.
The default database management system (DBMS) embedded in the system is Java DB (http://www.oracle.com/technetwork/java/javadb/) which is Oracle's supported distribution of the Apache Derby (http://db.apache.org/derby/) open source database.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com