In default, comparisons for these characteristics between the participating sample and the population of interest can be made, if they are known for the latter.
Fisher's exact test was used to assess the significance of term enrichments, as recommended by the authors, and the default multiple comparison correction (Benjamini-Yekutieli method) was applied.
A weighted sequence similarity network, G S, was constructed using all-against-all BLAST (version 2.2.15, default parameters) comparison of the full set of 26 197 mouse and human amino acid sequences in our dataset.
All the 22 HIV negative, eligible participants with or without helminth infections were included by default, for comparisons by HIV status.
Similarly, in MB patients, a small number of 22 ROM patients could then be recruited due to the fact that its supply was stopped by WHO and only 2 out of 22 (9.1%) defaulted in comparison to 34.5% in WHO-MB MDT.
This is also reflected in the fact that the average proportion of dominant stress pronunciations assigned to prime nonwords was only 0.40, showing that participants did not tend to assign dominant stress by default (see, in comparison, the proportion of 0.86 dominant stress obtained in Experiment 2, where nonwords were selected to be named with dominant stress).
Expression levels and "Present", "Marginal", "Absent" flags were determined with default parameters through comparison of matched and mismatched oligonucleotides for the respective gene sequence.
iHOMA2 can be used in default mode (for comparison with all published data using HOMA and HOMA2); in analytic mode, which allows %B and %S to be calculated from fasting insulin and glucose; or in predictive mode that allows fasting insulin and glucose to be calculated from %B and %S.
We used SPSS default post hoc comparisons (least significant difference).
Values for k = 20 (kFull) and k = 18 (kML) were used as default values (accuracy comparisons for different values for k are shown in Supplementary Figure S1).
