Sentence examples for default assembly from inspiring English sources

[ 55], and assembled into contigs using default assembly settings of The Gene Indices Clustering Tools (TGICL), obtained from the Computational Biology and Functional Genomics Laboratory (The Gene Index Project, USA).

CLC Genomics Workbench software (CLC bio, Aarhus, Denmark) was used to separately assemble the C. huegelii sequences using the default assembly parameters.

Raw reads were first cleaned by removing adaptor sequences and low quality sequences (Q > 20), and then assembled into EST clusters (contigs) using Trinity with the default assembly parameters (http://trinityrnaseq.sourceforge.net/).net/

Raw reads were assembled using the cDNA assembly algorithm of Newbler v2.3 (Roche) with default assembly parameters.

Gene family consensus sequences were assembled from 196,867 AW and 93,653 NW ESTs using Cap3 [ 19] with default assembly parameters except for the Cap3 parameters of the minimum EST overlap of 21 bases (-o 21) and sequence trimming of the first and last 10 bases (-y 10).

Default assembly parameters were used.

We first run assemblies using the three assemblers with their default parameters, and similar assembly results were obtained in assemblies using Mira and Cap3.

Scores were determined using default and optimized assembly parameters, except for Z. mays that was only assembled using default parameters.

CAP3 assembly default criteria used were: retention required a 40 bp minimum match, 90% minimum identity in the overlap region and 20 bp maximum unmatched overhangs.

GO-level sequence distribution for Biological processes, Molecular functions and Cellular components of the transcript contigs and singlet generated by Newbler default and optimized assembly are shown in Figure  3 (A, B respectively).

DOI: http://dx.doi.org/10.7554/eLife.01326.015 We propose that the overall robust homeostasis of the hippocampal network seen at the temporal sequence level and expressed during offline states of sleep and rest reflects the default sequential cell assembly architecture of the hippocampal network shaped by the multiple unaccounted experiences the animal has had in the past.