Sentence examples for deeply sample from inspiring English sources
Multiple representatives from each sequenced amoebozoan lineage were included to deeply sample the molecular diversity available within Amoebozoa and to assess congruence with other amoebozoan phylogenies.
Metagenomics is now providing extraordinary datasets that deeply sample natural variation, raising the question, how should this variation be represented?
The wide range observed was probably due to the fact that the EC library was not deeply sampled.
To date, the answer has often been that standard sequence analyses of deeply sampled genomic data sets favor Coelomata.
Dopazo H and Dopazo J (2005) performed standard sequence analyses of a deeply sampled genomic data set using a distant (fungal) outgroup.
Here we use similar approaches to examine patterns of nucleotide variation in population subgroups of a deeply sampled local population from Burkina Faso, West Africa.
Here we use "transcriptome" to refer to a collection of highly expressed genes that are deeply sampled at ample coverage for producing robust contigs (contiguous sequences) as well as low abundance genes where sequence depth and coverage limits assembly.
Analysis of deeply sampled CRISPR loci in natural populations are consistent with this observation; spacers at one end of the locus are nearly identical in all individuals sampled, while at the opposite end each individual cell has a unique spacer complement (Andersson & Banfield, 2008; Tyson & Banfield, 2008; Fig. 5b).
It was the most influential determinant of alpha diversity for all metrics considered except observed OTU count, which was influenced by the number of sequences (more deeply sampled sequences having more low abundance OTUs).-wrap-foot> Mixed effects models were created with Shannon index, Simpson index or number of observed OTUs as the response.
De novo genome assembly from shotgun sequencing data was used to obtain comprehensive and deeply sampled genomic datasets (up to 25 × coverage) for multiple organisms from AMD biofilms (Tyson et al., 2004; Allen et al., 2007; Lo et al., 2007; Simmons et al., 2008), which allowed for a direct analysis of in situ population heterogeneity.
In total, 56% of the 2nd oligonucleotide set represent genes from a specific library; however, a large number of those genes (24%) are from the two G. raimondii libraries that were prepared from heterogeneous tissues and which were more deeply sampled that most of the other cotton cDNA libraries.
