The full alignment of protein-coding genes consisted of 3,782 amino acids, with few indels (48 gaps in total, 6 taxa), and was deemed unambiguously aligned; of the aligned sites, 2,722 (73.3%) were identical.
The criteria defined for inclusion and exclusion in this study stemmed from discussions within the research team, where the rules and conditions that were deemed to be aligned with the scope of the study were identified.
Markey slammed what he called a "double standard" in which Pruitt deems state actions aligned with oil and gas interests to be kosher but questions state regulations that go beyond EPA rules.
For those publications that passed the inclusion criteria, four filters were applied to reduce the publications to only those that were deemed to be directly aligned with the focus of the study.
If not explicitly specified, a read is deemed to be correctly aligned if the mapping position has a distance of ≤5 to the true position.
Due to the variable quality in genome sequencing and the automated nature of the orthologue alignments, a residue was deemed as conserved if it aligned with the same amino acid and non-conserved if aligned with a different amino acid; for residues aligning with gaps in the alignment or X (indicating poor sequence quality), the data for that species were disregarded.
Radio Times, which the BBC has published since 1923, is among 11 sold outright along with a number of other titles deemed to be "less closely aligned to the BBC" such as Olive and Gardens Illustrated.
Radio Times, which the BBC has published since 1923, will be among 11 sold outright along with a number of other titles deemed to be "less closely aligned to the BBC" such as Olive and Gardens Illustrated.
Moreover, an aligned read is deemed to be correctly aligned only if the mapping position is identical to the true position of the read.
If a sequence can map to GRCh37 with > = 90% identity and > = 98% coverage, we deemed that it could be aligned to human reference genome.
