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Then by examining ortholog families in order of decreasing conservation level, the program screens out families that are not sufficiently conserved.
Therefore, intensification of exurban settlements had a complex effect on bird diversity, locally increasing richness but decreasing conservation priority species in areas where settlement had removed much of the forest cover.
Sorted in order of decreasing conservation, the categories are Identical, Similar, Destroyed, and Lost (see Methods, and Itoh et al. [ 32] for details on these categories).
Similarly, there were 50 predicted SP1 binding sites, of which 62%, 22% and 12% were conserved between human and primates, rodents, and opossum genomes, respectively, therefore, exhibiting decreasing conservation of these sites with evolutionary divergence.
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As outright land purchases have decreased, conservation is increasingly becoming an easement business.
Amino acid comparison of the human and mouse ORF2 proteins identifies two regions with decreased conservation relative to the complete protein (Figure 3B).
Windows with Z>1 were considered to have increased conservation, those with Z<-1 were considered to have decreased conservation, and windows with 1>Z>-1 had intermediate conservation.
It would be reasonable to assume that this clustering of selected sites is because mutations would either be compensatory or in a region of decreased conservation.
Unique PCSs of both maternally and paternally expressed genes are shorter and possess decreased conservation scores in comparison to unique PCS associated with autosomal genes.
This consensus sequence closely matches the E. coli consensus σ70 (-10) binding site (TATAAT) except for decreased conservation at the -11, -10 and -9 positions.
Comparing imprinted genes with or without paralogs, respectively, to the corresponding groups of autosomal genes, reveals that imprinted genes with paralogs are subject to decreased conservation between human and rodents (p < 0.04) and tend towards a higher Ka/Ks ratio (p < 0.09) whereas there is no significant difference between genes without paralogs in both groups (p > 0.3).
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