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Unsupervised hierarchical clustering with complete linkage was performed using Spearman's correlation as similarity measure, identifying three luminal A groups by cutting the dendrogram at height 0.39, which was decided as a threshold that gave convincing separation between groups.
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The timing and P + patterns in Figure 4 were used to decide on a threshold.
There are a number of precedents that can be useful for deciding on a threshold.
Given the HOCTAR performance relative to the first 50th percentile of prediction ranked lists, we decided to fix this as a threshold to consider bona fide target genes.
Although there are established criteria for declaring an SUI, it is important to exercise a degree of judgement in deciding a threshold for reporting an incident as an SUI.
However, it is difficult to decide a threshold correlation value above which one would classify a sample as definitively displaying the Core MYC signature.
In contrast, we decided a different threshold value for each variable node.
In general, we are interested in knowing what the FDR is when we choose a particular score as a threshold for deciding which positions in the genome are predicted to be binding sites.
However, if it was used as a threshold score to decide whether or not a candidate was to receive an interview, socio-economic background was not a significant predictor of whether an offer would be made.
Based on the limited available literature [ 1, 3, 16, 28– 34] we decided to use a cut-off value of 4/28 as a threshold for psychological abuse, and hence a score of 3 or lower was not considered psychological abuse.
Thus, as a threshold matter, the Ninth Circuit will need to decide whether the sponsors of a ballot measure have the requisite "standing" to pursue an appeal of a ruling holding that the measure is unconstitutional.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com