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Divergence dates were estimated using Bayesian molecular clock approach.
Divergences dates were estimated using Bayesian dating in BEAST v.1.4 [ 54].
The insertion dates were estimated using an average base substitution rate of 1.3 E-8 (Ma and Bennetzen 2004).
Node dates were estimated using a birth death process prior as proposed for reconstructing phylogenies without fossil lineages [ 33].
Molecular phylogenies and divergence dates were estimated using a Bayesian relaxed uncorrelated molecular clock assumption accounting for both calibration and phylogenetic uncertainties.
Divergence dates were estimated using each individual gene (with branch lengths optimized on the best ML tree) as well as a combined 2-gene dataset.
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Dormancy status on four collection dates was estimated using excised shoots.
Where the exact date of self swab was unavailable, a date was estimated using the date the specimen was received at the central laboratory.
The means of the flowering dates over years were estimated using best linear unbiased prediction with SAS PROC MIXED.
Dates of infection and survival were estimated using the midpoint date between initial-final plasma donation dates from 1985–2008 among those with plasma donation windows ≤2 years.
Divergence dates within the supertree topology were estimated using 52 genes calibrated with eight robust fossil dates using two different methods.
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