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A source is given attributes for everything we'd want to know to create a citation; date last accessed, URL available at, etc.
We downloaded the NONCODE V4 data set from http://www.noncode.org (29 October 2015, date last accessed).
The tree was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/, 12 November 2014, date last accessed).
Rice annotation data were retrieved from RAP-DB (http://rapdb.dna.affrc.go.jp/, 20 September 2013, date last accessed), and the data for B. distachyon and sorghum were downloaded from Phytozome (http://www.phytozome.net/, 20 September 2013, date last accessed).
Stata12 software (Stata Corporation, http://www.stata.com/, 14 September 2015, date last accessed) was used for the demographic and phenotypic analysis.
This systematic review used data derived from the Physiotherapy Evidence Database (PEDro; www.pedro.org.au, 23 October 2015, date last accessed).
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The results of each reaction were analyzed by uploading raw data to the Real-Time PCR Miner web site (http://www.miner.ewindup.info [date last accessed; 6 September 2013]).
The genome assembly (release v7.1) of Silurana tropicalis was downloaded from Xenbase.org [ 105] [date last accessed 29 July 2014]: ftp://ftp.xenbase.org/pub/Genomics/Tropicalis_Scaffolds/7.1/xenopus_tropicalis_v7.1.tar.gz.org/pub/Genomics/Tropicalis_Scaffolds/7.1/xenopus_tropicalis_v7.1.tar.gz
This was determined using NCBI-Blast2 (http://blast.ncbi.nlm.nih.gov/Blast.cgi PAGE_TYPE=BlastSearch&PROG_DEF=blastn&BLAST_PROG_DEF=megaBlast&BLAST_SPEC=blast2seq [date last accessed 26 Sep 2011]).
This was determined using ORF Finder (http://www.ncbi.nlm.nih.gov/gorf/gorf.html [date last accessed 26 Sep 2011]), coupled with BlastX against the amino acid sequences of TE-encoded proteins.
We used RepeatModeler (http://www.repeatmasker.org/RepeatModeler.html [date last accessed 26 Sep 2011]) to identify de novo repetitive sequences for each species.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com