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The raw sequencing datasets were uploaded to the NCBI SRA database (accession No: SRP043973).
The number of downloads are listed but not how many datasets were uploaded to the repository using DataUp.
The DEG datasets were uploaded to the IPA application and mapped to the Ingenuity Pathways Knowledge Base (IPKB).
Resulting expression datasets were uploaded into the DAVID database [ 23] and gene enrichment analysis was performed against h-MitoArray gene list.
All eligible datasets were uploaded to INMEX, then processed, and annotated to insure that the data format and class labels were consistent across datasets.
The kidney IRI datasets were uploaded from the public genomics data repositories Gene Expression Omnibus (GEO, NCBI, (http://www.ncbi.nlm.nih.gov/geo) and ArrayExpress (EBI, http://www.ebi.ac.uk/arrayexpress).ac.uk/arrayexpress
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Anonymised datasets are uploaded to a website and segmentation results are returned with 3-D models that may be viewed on a website, in a dynamic document, or within a dedicated software viewer for simulation of surgical scenarios.
After the expression datasets are uploaded, users can set the required parameters on the web graphic interface.
The metagenomic dataset was uploaded on the MGRAST server for further bioinformatic analysis.
Access to the Data Bank is also restricted such that once a dataset is uploaded, it cannot be manipulated.
The GSE19515 dataset was uploaded by the German cancer research center, including genomic methylation data of 27 samples, as well as their sex information.
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