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Datasets were processed and scaled using the HKL2000 package (Otwinowski and Minor, 1997).
Functional imaging datasets were processed and analyzed using scripts within FSL 4·0 (FMRIB's Software Library, www.fmrib.ox.ac.uk/fsl) [20].
The datasets were processed and scaled using HKL2000 [ 21].
Both sequencing datasets were processed and automatically annotated using the JGI IMG/M system [ 50].
Datasets were processed and quality checked separately (see Materials and Methods).
The three available tardigade datasets were processed and compared (Table 2, Figure 1) in order to get an overview of the similarity and redundancy between our library and the other two EST resources.
Similar(54)
While the ExpressionData resource is expected to grow as new datasets are processed and made available, it does not aim at having complete sets of data for every organism.
For the depression experiment, the female dataset is processed, and we obtain 20 features.
For the district-personality experiment, the Guangdong dataset is processed and we obtain 19, 21, 18, 22 and 20 features for A, C, E, N and O, respectively.
A summary report shows how the contrast dataset was processed and imported as well as information on the gene sets (UP, DN, and AR) extracted and stored for each contrast.
To assess the impact of retaining duplicate di-tags we detected significant interactions in HiCUP-processed CHi-C datasets using the CHiCAGO pipeline (five datasets were processed: Samples 1 and 2 are described previously and Samples 3, 4 and 5 were generated from mouse embryonic stem cells and have the Gene Expression Omnibus accession GSM1888519).
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