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The affinity groups obtained with the three datasets were mapped using a Geographic Information System.
In an attempt to reconstruct the genome sequence of one of the dominant methanogenic species, both datasets were mapped onto the published genome of Methanoculleus marisnigri JR1, the only Methanoculleus strain for which a completely sequenced genome currently exists.
CABOG and Newbler contigs for six datasets were mapped to the annotated reference.
The unique sRNA sequences pooled from SOLID and Illumina datasets were mapped to Brassica rapa genomic scaffolds using Bowtie [ 75].
Zebrafish datasets were mapped with Bowtie [ 52] against the zebrafish genome (danRer7) and a precompiled exon junction database.
The identifers for molecules in the microarray and proteomics datasets were mapped to UniProt [ 30] with reference to the UniProt XML, and the PIR [ 99] mapping to UniProt.
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Figure 5 visualizes skeleton models extracted from both systems at selected frames in the coordinate where two datasets are mapped.
Even when the entities between datasets are mapped to each other, it can still be difficult to intuitively write queries that span datasets because of this heterogeneity.
All datasets are mapped to hg18rpa.
If high and low dynamic range datasets are mapped together, the high dynamic range data will have a greater influence on the clustering of genes.
The intronic miRNAs in Baskerville et al.'s dataset and Barad et al.'s dataset were mapped to the host genes in Su's dataset, respectively.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com