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Forty-thousand datasets were generated as
The test datasets were generated as follows: All measured intensities were replaced with random numbers ranging between the minimum and maximum of the actual observed experimental values.
Our empirical nDNA sequence datasets were generated as part of a comparative phylogeographic investigation that included two saproxylic Collembola species [ 5, 39, 40].
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Among them, 9 long reads datasets are generated as described in [ 27, 36].
The following datasets were generated: Mikheyev AS, Linksvayer TA, 2014, Data from: Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns, http://datadryad.org/resource/doi 10.5061/dryad.cv0q3, Available at Dryad Digital Repository under a CC0 Public Domain Dedication.
Although the in vivo and in vitro datasets were generated from different experimental materials as well as different instruments, they both stem from the same cell type: monocyte.
As soon as these datasets were generated we released them through oadb.tsl.ac.uk.ac.uk
As the expression profile datasets were generated on different platforms, and as many of the genes represented were measured on multiple probes in any one dataset, a method to select the optimal probe to represent each gene in an unbiased fashion was used when joining multiple datasets.
Datasets were generated for intra- and inter-rater analysis, as well as a reference dataset for accuracy calculations.
Using the PHYLIP package, bootstrap datasets were generated with seqboot and used as input data for neighbor.
To estimate the type I error rate, the null datasets were generated under the same scheme as used for the detection power analysis except that there was no causal pair intended.
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