Sentence examples for datasets were conducted using from inspiring English sources
Ontological and functional domain comparisons between Drosophila and mouse proteomic datasets were conducted using Ontologizer 2.0- a multifunctional software tool for GO term enrichment analysis and data exploration [22].
Phylogenetic analyses of these two datasets were conducted using PAUP*4.0 [ 36].
The MP analyses of concatenated datasets were conducted using PAUP* version 4b10 [ 95] and consisted of heuristic searches with 100,000 replicates of random stepwise addition and TBR branch swapping.
Maximum likelihood analyses on partitioned and unpartitioned datasets were conducted using Randomised Accelerated Maximum Likelihood, RaxML version 7.4.2 with 100 bootstrap replicates and 10 subsequent thorough ML searches under the general time reversable (GTR) substition model and the gamma model of among site rate heterogeneity [ 52].
Statistical testing of the various datasets was conducted using IBM SPSS Statistics ver. 20 (IBM Australia, Sydney, NSW, Australia).
Double-data entry of district-level datasets was conducted using CSPro software (U.S. Census Bureau, Washington DC) for both rounds of IBBA.
Ontological protein classification and clustering of the Drosophila cardiac dataset were conducted using the Database for the Annotation, Visualization and Integration of Data (DAVID) (http://david.abcc.ncifcrf.gov/) and ProteinCenter (Proxeon).
The alignments of these dataset were conducted using ClustalW 1.74 [ 43].
Bayesian phylogenetic analyses of the combined chloroplast dataset and the ITS dataset were conducted using MrBayes version 3.1.2 [ 52] with the GTR+ G + I and GTR+ G models of nucleotide substitution, respectively.
GenBank accession numbers for all planthopper sequences are provided in Table 5. Phylogenetic analyses of the bacterial dataset were conducted using Maximum Likelihood (ML) and Bayesian Inference (BI) reconstruction methodologies.
To do so, secondary analyses of the ICILS 2013 dataset are conducted using the student data set from the 21 education systems that participated in the study.
