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The combined datasets were completed by introducing question marks for the absent data partitions.
Datasets were completed with 'noise' proteins selected at random from the proteome irrespective of whether the motif was found in the protein or not.
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Once this dataset was completed, we used two sources to calculate the distance between each pair of ports: the aforementioned AIS data and data obtained from http://www.vesseldistance.com, which determines the shortest distance based upon a specific waterway network.
To have a good coverage of the goat breeds, the dataset was completed with 1484 sequences containing the Capra hircus HVI control region (450 to 1200 bp long) retrieved from GenBank (Table 2).
The dataset was completed by the MLGs that were observed within only the apterous samples.
The dataset is completed by comparative genomic hybridization (CGH) data for each patient (n = 71).
This dataset was completed by an analysis of the antibiotics resistance pattern of N. cyriacigeorgica GUH-2 using plate assays.
Our new dataset was completed with published NAT2 sequences from sampled African populations obtained through a comprehensive search of publications.
The dataset was completed with two individuals of Oreina virgulata (i.e. a closely related species) that were used as the outgroup [ 34].
In particular, we assumed that the datasets were complete (and thus that all infected farms were detected) and that only the first farm in each outbreak was infected from an outside source.
Overall, 40 subjects' datasets were complete for both assessments and included in analysis.
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CEO of Professional Science Editing for Scientists @ prosciediting.com