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Montage tomographic datasets were collected using a FEI Tecnai TF20 or a FEI Tecnai TF30 at a magnification of ∼14,500× or ∼15,500×, respectively, using the tilt-series acquisition software SerialEM [56].
Since all datasets were collected using synchrotron radiation, determination of systematically absent reflections should be reliable.
Both datasets were collected using the same inclusion criteria and have a similar distribution of age and ethnicity.
As both datasets were collected using ChIP-Seq, this sharp divergence is more likely biological than technical: PC3 cells do not express androgen receptor endogenously and its AR binding was profiled following transfection of an AR construct [ 11].
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One of the experimental datasets was collected using a GLONASS transmitter and a fixed receiver.
The second dataset was collected using Galileo as the transmitter, while the receiver was mounted on a ground moving vehicle (Figure 14).
One dataset was collected using a narrative interview approach, (n = 13) and the other using a postal survey (n = 82).
An initial native dataset was collected using the Rigaku software then indexed and scaled using the HKL2000 package (Otwinowski et al. 2003).
The second dataset (GEO accession ID: GSE6956 [ 10]), which was used as the testing dataset, was collected using the Affymetrix Human Genome U133A 2.0 array for 69 fresh-frozen prostate tumors and 20 control samples from surrounding normal prostate tissue [ 10].
The PPP dataset was collected using low and high performance mass spectrometers including LCQs, LTQs, QTOFS, QSTARS and also an FT-ICR by one laboratory, and was processed using different searching algorithms such as Mascot and Sequest.
Echoes for dataset II were collected using this higher-amplitude transmitted pulses.
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