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DHS staff found this dataset too small to work with so a larger test dataset consisting of 1,000 randomly selected records from both the sudden deterioration and mechanism of injury only datasets was compiled.
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Note that these datasets were compiled in 2008 and have not been updated since that time.
The vegetation indices, climate data, and solar radiation datasets were compiled for each month from 1999 to 2010 and the soil texture and elevation data remains static.
Both datasets were compiled using literature searches of Pubmed and other sources.
Two datasets were compiled for these purposes: the extended database of host European sequences with 5,096 individuals from Iberia, Balkans, Hungary, Poland and Baltic countries (from Additional File 1 in Mendizabal et al. [31]), whereas Indian sequences were collected from Dubut et al. [32] (n = 3,751, excluding Sri Lanka).
The learning datasets were compiled using 1) average gene expression fold change of each gene cluster converted into discrete values using a 2-fold threshold, and 2) manual annotation of the remaining values (experimental perturbations, FZF1 genotype and Fzf1p activity) based on the experimental conditions and strain genotypes (missing values were allowed).
Two meteorologic datasets were compiled.
After data collection had ended, both datasets were compiled at Cornell University for analysis.
The "Combined-AP/MS" and "LC-multiple" datasets were compiled from the affinity purifications followed by the mass spectrometry (AP/MS) method and literature curation, respectively, while the other three datasets were compiled from diverse data sources.
The NMR spectra were exported from TOPSPIN and imported into R [ 124] where the datasets were compiled.
Separate datasets were compiled for each genus: one that contained 48 Physalis and the other with 49 Solanum S-alleles.
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