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Applying GET to transcriptomic datasets produced from tissue development studies the results correlated well with developmental stages.
In datasets produced from the ddRADseq protocol, a third bias is associated with the length of restriction fragments.
Despite the negative correlations, this location was included in the mixed datasets produced from the site-specific model selection.
Our genome browser, Trackster, is motivated by the need to enable visual exploration of increasingly large datasets produced from high-throughput sequencing data.
The sparse datasets produced from the ddRADseq protocol introduce a high sampling error to allelic ratio calls, increasing the uncertainty of SNP calls and an increased incidence of coordinates that appear as a SNP in one dataset but not another.
Furthermore, the analysis of Neiman et al. [ 17] is based on a mixture of datasets produced from different sampling approaches and methods ranging from mtDNA sequencing to tissue grafts.
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Here, we describe in details a whole microarray transcriptome dataset produced from tsetse flies symbionts, Sodalis glossinidius and Wigglesworthia glossinidia.
Sequences obtained by qPhage plus pyrosequencing were similar to a dataset produced from conventional Sanger-sequenced transducing-units (TU), with no biases due to GC content, codon usage, and amino acid or peptide frequency.
The method has been tested on a simulated dataset produced from mixtures of DNA extracted from four 1000 Genomes Project sample and four spatially separated samples from a primary, untreated high-grade ovarian tumor.
Accordingly, a total of six datasets were produced from Datasets 1 and 2, i.e., Dataset x (MAS), Dataset x (RMA), Dataset x (DFW), where x = 1 or 2. Datasets 3 38 were produced from the Affymetrix HG-U133A array, which is currently the most used platform.
Mitochondrial and nuclear SNP datasets produced contrasting ML phylogenies: samples from Rio had a homogeneous nuclear background divergent from those found in Asia and Australia, but a highly heterogeneous mitochondrial background (Fig. 2).
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