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Instead, and contrary to most datasets on the size of DBs versus distance from the vent (Wohletz and Sheridan 1979; Sigurdsson et al. 1987; Druitt 1992), the decrease is local for each ash body from its upstream end point (Figs. 6 and 8), while no particular trend is observed with distance to the vent (zone H contains bigger DBs than A, though 2.5 km further away from the vent).
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Even with compression, the amount of memory required to store these output files internally may be prohibitively large enough to render this potential optimization infeasible for output datasets on datasets of the size that we are interested in studying.
The distance in grid points (pixels or voxels) between the image frame border and the FoI border varied between datasets depending on the size of the objects of interest (50 grid points in C2DL-MSC, C3DH-H157, N2DH-GOWT1 and N3DH-CHO; 25 grid points in C3DL-MDA231 aN2DL-HeLaeLa).
The actual time required to upload a dataset depends on the size of the dataset and the bandwidth available.
It is crucial to note that the number of data points in the initial dataset depends on the size of search space.
For standard tomography datasets, on the used medium size cluster, the reconstruction job lasts about 1 min or less and is significantly faster than the acquisition part.
To avoid this overhead, the dataset RDF/XML serialization was re-implemented to use the Streaming API for XML (StAX) [37], resulting in reduced response time of dataset retrieval (2-10 timprovementement, depending on the size of the dataset).
Depending on the size datasets and the server load, computations take from between 2 3 and 30 40 minutes (Additional file 1: Figure S1).
This can be explained by the fact that the specific EBI hardware can run very fast full table scans on a dataset the size of ChEMBL.
While the method produces good results on a number of spine configurations, the iterative nature of the grassfire algorithm results in slow execution times on modestly sized datasets, on the order of half an hour for a 512×512×512 stack, the typical size to reconstruct a single spiny branch.
Figure 2 shows the relative performance of different size datasets on the C4 cluster of the Meraka Institute (3.6 GHz Irwindale Xeon CPUs), using 31 slaves for both wcd and PaCE.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com