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The datasets generated in the current study are available from the corresponding author upon reasonable request.
This result was found to be quite consistent across the many datasets generated in the field trial.
The phylogenetic networks for each of the datasets generated in the previous steps were constructed with the SplitsTree4 software [ 28].
Similarly, the large species-specific datasets generated in the present study can be further analyzed by other investigators to address species-specific questions.
The simulated datasets generated in the current study are available by request directly from the authors or through http://www4.stat.ncsu.edu/~motsinger.stat.ncsu.edu/~motsinger
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The actin and beta-tubulin alignments were built by retrieving from GenBank sequences belonging to all rhizarian (actin) or eukaryotic (beta-tubulin) groups, and adding to them the sequences identified in the datasets generated in this study.
The qRT-PCR results confirm that the transcriptomic datasets generated in this study are sufficient to assess the mRNA-miRNA interactions in the response of P. tomentosa to PaWB phytoplasma.
The datasets generated in this work are available from the corresponding author.
The datasets generated in this study was treated by the Ward's method of linkage with squared Euclidean distance as a measure of similarity.
TCGA data provide a unique opportunity to enable different and potentially complementary forms of analysis of cancer phenotypes given the comprehensive nature of the datasets generated in this effort.
Together, the datasets generated in this study advance gene-centric models of kidney development pathways towards more complete transcript-centric models, capturing the transcriptional landscape of gene expression.
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