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This restriction excluded the analysis of COAD, OV and UCEC datasets from the analysis of tumour suppressor genes, oncogenes, and exclusivity of regulation.
Moreover, we have discussed the results pointing at the overall data quality problem, since it is the main cause of rejecting some datasets from the analysis.
Excluding the human gut datasets from the analysis, with the exception of Tenericutes (22.2%), the GC-contents of all phyla were significantly correlated between 55.6% and 88.9% of the time (supplementary table S1 C, Supplementary Material online).
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We thus decided to discard this dataset from the analysis.
The expression variations of genes during the T. rubrum conidial germination can be graphically represented in batch by choosing a dataset from the analysis menu.
HM cleaned the original datasets from the previous analysis, conducted part of the current data analysis and assisted in the preparation of the manuscript.
A second computer program was designed that analyzed the datasets from the mixed analysis for the frequency of occurrence of the stored fingerprints.
The method of CT-osteoabsorptiometry (CT-OAM) for assessment of the density distribution was used on the same 3D reconstructions of the conventional datasets from the descriptive analysis described above.
First, we used a microarray dataset obtained from the analysis of several human wild-type and cancer tissues [ 12].
Genes not included in both datasets were excluded from the analysis.
Low quality datasets were excluded from the analysis if they presented low levels of signal (that may indicate insufficient hybridization to the probes), evidence of missing genes, imputed data, datasets that are too small (<4 samples).
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