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Excepting the Mugil gyrans/curema MOTU, all species and genera identifications with an FOC > 10% from either dataset were represented in the other dataset at statistically similar FOC's (figure 1 a) and proportional amounts (figure 1 b).
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The three-locus subsystems that occur in this dataset are represented in Figure 1b d by their genotopes.
The dataset was represented in windows that have experimentally optimized length of 7 (wn=3, wn=3) (data not shown).
The raw TCM clinical dataset was represented in a reduced feature space so that we can build a hierarchical feature representation pattern with a tree structure.
The top 10 statistically significant GO functional categories enriched in each dataset are represented in Table 2. Analysis of target genes for miRNA Cluster 2 revealed enrichment in terms related to cell-death regulation, cell-cycle regulation and cell proliferation.
For each trimming method and each of the three levels of divergence (i.e. ×1, ×2, ×3), a ROC graph (e.g. [ 51- 54]) depicting the plot of the true (y-axis) and false (x-axis) positive rates for each of the 200 datasets is represented in Figure 1.
We obtained the full-length EST sequences of the clones spotted on the CDMC Drosophila 12K version 2 cDNA microarray from FlyBase for all of the genes in our dataset that were represented in the Drosophila 12 Genome Consortium D. melanogaster group data, representing 1,311 genes [ 49].
Overall only 55% of the regions within the Known Gene dataset for all genes were represented in the CCDS dataset.
The relational structure of large-scale dataset is represented with graph, in which data elements correspond to the vertices, the relationship between data elements is represented by the edge, and the strength of relationship is reflected in the edge weight.
We collected protein and gene interaction data for the 4,422 genes from the EST dataset (Additional file 4) that were represented in the BioGRID database (release 2.0.36) [ 47, 73].
This indicates that very low expressed transcripts were represented in our dataset.
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