Sentence examples for dataset were obtained using from inspiring English sources
The 3D structures of the 14504 ligands in the Borodina dataset were obtained using the PubChem Download Service (using the PubChem Substance IDs from Borodina et al).. Of these, 16 could not be handled by the MMFF94 forcefield, 5202 had no rotatable bonds (this fraction included a large number of trivial salts) and 2348 had more than 1 million conformers (according to Confab's torsion rules).
Transcript mapping and abundance estimation for each sample in the dataset were obtained using bowtie v0.12.7 [ 49] and RSEM v1.2.8 [ 57].
For Manesh215, the values of ASA in Manesh215 dataset were obtained using the ASC program [ 49] with van der Waals radii given by Ooi et al. [ 50].
In the image quality assessment configuration, the dataset is obtained using eight different databases, according to two different setups.
Diameter inside bark along the bole for each tree in the held-out dataset was obtained using the fixed effects parameters of the fitted taper equation.
3. The original dataset was obtained using a multiple primer approach, which could detect more protistan rRNA genes than a more traditional single primer approach.
The pairwise number of transitions and transversions corresponding to each dataset was obtained using DAMBE 4.5.56 [ 108] and the plots were drawn with MicroSoft Excel.
This dataset was obtained using the Affymetrix platform GPL96, which differed from our training cohort, so we verified the power of LCPI by adjusting it to the best cutoff.
Datasets were obtained using the Stanford Research Institute SRI PathWay tools [32] and by later curating the database with Arabidopsis-rice ortholog annotations.
