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Some terms that were over-represented in the whole dataset were not in young paralog families; conversely, signal transduction and transcription were over-represented and under-represented, respectively, only in young paralog families.
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If the uploaded dataset is not in RDF format, the features are generated with dc title equal to the field name in the file and ot:hasSource property linking to the dataset, the combination of both properties used as a unique key.
I did not suggest to replace the analysis of catalytic subunits with that of the c/K subunits, but to test that the latter dataset is not in gross conflict with the phylogeny derived from the former.
A problem of Eq. 1 is that coAfrequency is a non-normalized metric, i.e., the set of weights of the datasets is not in the range 0 to 1.
It should be noted that NR-targets validated in external dataset were not involved in our training set.
The 120 Affymetrix controls (Xlc-PSIDs) in the dataset were not included in the analysis of X. laevis gene expression patterns (n = 15,491).
Compounds included in the PCM dataset were not present in the target prediction dataset.
The peptide contained in the training dataset were not contained in the above 13 datasets.
However, some differential OTUs in the 1% cutoff dataset were not represented in the 3% cutoff set and vice versa.
In our experiment, data related to two drivers of the Security dataset were not included in the training phase and were thus used to test the driver verification task.
Our analysis shows that 956 proteins of our membrane protein dataset were not present in Clamp's dataset.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com