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Phylogenetic hypotheses of the sister taxon of Stygiocaris in the Combined 16S/H3 dataset were investigated using the Shimodaira–Hasegawa (S H) test in PAUP (1000 replicates of resampling of estimated log-likelihood test distribution) and Bayes Factors [63] in MrBayes (constrained versus unconstrained harmonic means of likelihood values [64]).
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The resulting dataset was investigated using maximum parsimony (hereafter MP) and Bayesian phylogenetic inference methods [ 44].
Just as the mtDNA data, the AFLP dataset was investigated using MP and Bayesian phylogenetic inference methods.
The presence of a clock-like signal in this dataset was investigated using Path-O-Gen [ 21], which roots the maximum-likelihood tree at the position that is most compatible with the assumption of the presence of a molecular clock.
Concordance of the agroecozones with other widely used datasets was investigated using MapCurves, a quantitative goodness-of-fit method.
Cytoplasmic effects were investigated using a dataset comprising three breeding groups of Welsh Mountain sheep.
The designed 12S mini-barcodes and their associated primer pairs were investigated using a dataset of 240 bird species for which complete reference mitochondrial genomes were available (Addition file 1: Table S1).
NTCP-fitted parameters for patients with local disease were investigated using both datasets.
The efficiency in using the transformed dataset to perform normal/tumor classification was investigated using feature partitioning with informative features (gene annotation) as discriminating axes (single gene expression or pair-wise gene expression ratio).
The different roles played by conventional non-covalent and cation π interactions in stabilizing protein structures have been investigated using a dataset of 62 non-redundant DNA binding proteins.
The source process of the 2015 Gorkha earthquake has been investigated using various datasets such as near-field waveforms, teleseismic waveforms, and geodetic data (e.g., Avouac et al. 2015; Galetzka et al. 2015; Grandin et al. 2015; Kobayashi et al. 2015; Yagi and Okuwaki 2015).
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