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Moreover, the induced signals for the test dataset were generated using an independent forward solver in the frequency-domain, introducing an additional source of discrepancies in forward modelling.
The stereo image pairs in this dataset were generated using a structured lighting system, and were meant to present new challenges for the next generation of stereo algorithms.
For each scenario, K = 500 dataset were generated using R software version 2.15.0 (R foundation for Statistical Computing, Vienna, Austria).
Maximum likelihood single-gene trees of each marker (28S rRNA, 16S rRNA, COI) and multi-gene trees of the concatenated dataset were generated using RAxML v. 7.2.6 [ 97].
The rice and barley dataset were generated using the RNA from root tips while the wheat data was obtained from whole roots.
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Our dataset was generated using several generations of Illumina GA technology, but considering the current throughput of Illumina sequencing (up to 100 Gbp per flowcell), a gene catalog of this scale can now be produced using a single lane of Illumina mRNA-Seq.
The conformer ensemble for each molecule in the dataset was generated using the OMEGA software [28] from the OpenEye Scientific Software , Inc
The UGOKI3D dataset was generated using a Microsoft Kinect v1 for evaluating our previous HAR method, which used the discrete Fourier transform and neural networks [30].
The other dataset was generated using the program InSillicoTEM (Vulovic et al., 2013) to incorporate near experimental microscopic effects including contrast transfer function and detective quantum efficiency of camera.
The synthetic dataset was generated using the methods of Laan and Pollard [18].
The final 1034-line dataset was generated using 230 papers and included 135 predator species, 179 prey species, and 299 predator-prey species combinations (Appendix S1).
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