Exact(4)
The dataset was modified to avoid possible GC biases in SAGE [ 34]; we removed 7 libraries with mean tag GC > 0.5, as in [ 35].
To further test this idea, the dataset was modified by removing the regions of the H NMR spectra containing the BCS resonances and PCA was performed again.
To test if the collection of pre-intubation encephalopathy scores was necessary, the Glasgow dataset was modified to compare the CTP score with correct encephalopathy, with the CTP score excluding encephalopathy scores.
This dataset was modified for dating divergences using BEAST: 1) Four outgroup taxa were added to match calibration points in Nei et al. [ 34]: 060_ Ampelopsis brevipedunculata, 096_ Leea coccinea 'Rubra', 129_ Cayratia japonica, 247_ Parthenocissus spp.. Leea and Cayratia had substantial amounts of missing data (Additional file 1).
Similar(56)
The Splitter algorithm for peak finding was modified to our dataset, and revealed 230 high confidence predicted peaks in PND4 and PND15.
An in silico routine for AFLPs [ 5] was modified here to simulate the AFLP procedure on cDNA datasets.
As mentioned earlier, the testing dataset has been modified to simulate a real-world streaming environment from multiple sensors.
Note that since CHASM was trained with manually curated driver mutations from COSMIC we could not use COSMIC datasets to assess CHASM; moreover, the datasets used were modified to eliminate the mutations that appear within the training set of CHASM.
The remaining two datasets have been modified or are novel.
To confirm the above findings, further phylogenetic analyses were performed using three selected datasets that were modified from the original by either excluding long-branch taxa, using crustaceans as an outgroup, or excluding collembolans.
Thus, algorithms for livestock datasets need to be modified to enable imputation of low-coverage sequence data and its large-scale use for GS.
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