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This dataset was compiled from various sources using different scales.
The dataset was compiled from the NCBI nucleotide database using curation steps designed to exclude incomplete plasmid sequences, and chromosomal sequences misannotated as plasmids.
To achieve these results, a large proxy series dataset was compiled from public databases or collaborations.
A modern dataset was compiled from professional and amateur samples made between 2000 and 2009, the majority being collected in 2009 by volunteers participating in the Evolution MegaLab.
Studies published in duplicate were included once but a comprehensive dataset was compiled from all publications.
A dataset was compiled from all 31-day intervals contributed by each patient.
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The pk168 dataset is compiled from PseudoBase (van Batenburg et al., 2001), which includes 16 categories of pseudoknots.
Their datasets are compiled from many thousands of temperature measurements taken across the globe, from all continents and all oceans.
The "Combined-AP/MS" and "LC-multiple" datasets were compiled from the affinity purifications followed by the mass spectrometry (AP/MS) method and literature curation, respectively, while the other three datasets were compiled from diverse data sources.
Next, to account for experimental bias, reliability and completeness [ 26- 32], nine yeast protein interaction datasets were compiled from different sources (see Methods).
Two different datasets were compiled from each genome: one containing highly expressed genes (HEG) and the other set consisting of the all genes of the corresponding organism.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com