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Dataset upload and graph generation times were obtained using the Google Analytics User Timing library (analytics.js).js
The "finished"or "processed" data (ones containing a final Data Table of p-values and QAS for completed association tests) can be uploaded directly by following instructions for dataset upload on the GWATCH website.
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The source PPI dataset uploading was organized in a set of SSIS modules executed at the server side.
For example, for each dataset uploaded to SEEK, the JERM describes what type of experiment it was, what was measured, and what the values in the dataset mean.
In most cases, however, they were just a product of the protein identifier conversions at the various stages of the PPI dataset uploading and formatting and had to be eliminated at the integration stage.
Here we report the experimental design and the description of the ChIP-sequencing and microarray expression datasets uploaded to NCBI Sequence Research Archive (SRA) and Gene Expression Omnibus (GEO).
DataSet handles primary datasets, such as gene expression datasets, uploaded by the user.
Cloud services will also be considered to support metagenomes datasets uploads.
We acknowledge the Scientific Services at The Jackson Laboratory, particularly Tim Stearns of Computational Sciences who performed the computational comparisons of the datasets uploaded to GDP.
We can cite the number of downloads of the add-in and the number of datasets uploaded to ONEShare, however this does not give us metrics that allow comparison of add-in versus web application.
The metagenomic dataset was uploaded on the MGRAST server for further bioinformatic analysis.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com