Sentence examples similar to dataset subclass from inspiring English sources

The number of strongly differentially expressed genes for cross-dataset subclass pairs might differ.

By defining datasets as subclasses to other datasets, common metadata can be shared among the parent and child datasets.

With previously reported prognosis-associated genes (Lee et al. [ 2 ], Hoshida et al. [ 8 ], public HBV-HCC [ 3 ] and public HCV-HCC u datasets), patient subclasses were determined using hierarchical clustering, and compared with subgroups obtained from our pathway-based method.

These categories can then be used to define relationships within an individual ontology such as defining one dataset as a subclass of an existing dataset or defining one workflow component as a subclass of an existing workflow component.

However, the cluster pattern of species outside the core urostylid group is rather different among trees based on Datasets 1, 2, and 4. In analyses inferred from Dataset 3, the subclass Protocruziidia branches at the deepest level, however, compared to trees based on Datasets 1, 2, and 4, the clade comprising the euplotids is more closely related to the "core" Hypotricha.

The five other datasets, particularly the Giordano dataset with 7 subclasses, were used to cross-validate the results of the molecular classification, the classifiers, and the functional analysis of differential genes [5], [43] [45].

Thus, we examined the molecular similarity between reclassified MFH samples and their predicted corresponding STS subtypes from different datasets using the Subclass Mapping (SubMap) methodology as previously described [14] (Gene Pattern Software, Version 3.0, Broad Institute, details in Data S1).

For further details about the datasets used for subclass definition and validation see Supplementary Table one in Hoshida et al. [ 7].

SMR nucleotide sequences used for Syn-SCAN analysis [ 67] were selected from each SMR subclass protein dataset to represent the taxonomic variation from Archaea and Bacteria and represented those members with the most SMR subclass diversity.

Similarity between the intrinsic and ECM subtypes identified in the two datasets was assessed by subclass mapping using the SubMap module of GenePattern software v3.8 27.

Once the dataset passes this filtering step, among subclasses with a few time lags, PARE proceeds to classify each gene pair into a particular subclass in which an interaction occurs most probably.