Exact(2)
ML analyses were run ten times per dataset, starting from ten different starting trees.
When removing 10%70%% of sites in the LamininNT-EGF dataset, starting from the fastest evolving, branch support for Netrin-1-Laminin-γ and Netrin-4-Laminin-β stayed ≥90% (fig. 5 E).
Similar(58)
We generated two synthetic datasets starting from the E. coli regulondb network and yeast MacIsaac network (both described above) using GeneNetWeaver.
The analysis was repeated on these variant datasets starting from the probe smoothing step.
Non-parametric bootstrapping was performed with heuristic searches of 1000 replicate datasets starting from a neighbor-joining tree (multrees = yes).
39 Although the dataset covered only 2014, and some changes in registration practice occurred in 2012, 40 we used it as a blueprint to generate annual attribution datasets starting from 2011-12 and moving back to 2006-07.
The RF-ratchet runs took between 5 seconds (for the Sea Birds data set) and 90 minutes (for the legume dataset) when starting from a random sequence addition tree.
Sixty new ChIP datasets from 18 publications and ENCODE murine datasets were analyzed, starting from the raw data set in each case, and peaks were identified in each sample using the protocol described previously [8].
To build this dataset we started from information published in bat-plant databases [38], and complemented it with literature mostly from South America.
In particular, in the first dataset we start from the work of Metzeler and colleagues [ 13], and we illustrate alternative approaches to study the added predictive value of their score, in addition to their performed validation strategy based on the p-value of a significance test in the Cox model.
The time length of the dataset is 30 s (starting from 1 s before the S-wave arrival, which is carefully identified by visual inspection).
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