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Given the large number of organisms available to us, we did not trim our dataset, reasoning that the dangers of oversampling were less important and less likely to occur than the inadvertent introduction of bias.
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The observed heterogeneity could be explained by larger sample size for the LUAD dataset, this reasoning is not true for COAD that in spite of having around 2/3 of the samples in the PRAD dataset (Supplementary Table S1) results in higher number of high scored PIGs.
It relies on some concepts from the RICORDO framework [ 31], which illustrates querying BioModels Linked Dataset through intermediate reasoning over ontologies used for annotating resources [ 32].
The CPN consists of edges and nodes representing upstream controllers of gene expression largely generated from transcriptomics datasets using Reverse Causal Reasoning (RCR).
The result drawn from Dataset 2 shows how the reasoning process may be extended.
Figure 2, taken from the AB_Easy test case of the AVSS 2007 dataset [27], illustrates the intuitive reasoning of this feature.
In an effort to quantify our reasoning, we assembled a dataset of the $1 billion+ exits (excluding companies still private) from January 1 , 2004 to June 30 , 2014 to determine how many dragons there were within that pool.
We apply this reasoning to a network dataset combining identification of direct competitors and selection of advisors among the elite of cancer researchers in France.
These representations were generated from the model annotations and enabled complex ontological reasoning over the resulting dataset.
Decision trees are one among interesting and commonly encountered architectures used for learning, reasoning and organization of datasets.
Reasoning that these experimental datasets might provide a resource for defining of novel types of sites to be used in target prediction, we re-examined the functionality of these sites in mediating target mRNA repression.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com