Memory-based applications are faster for viewing and navigation (after an initial delay while loading the data) and can provide whole dataset overviews and statistical summaries, but the size of dataset they can handle is limited by the amount of available memory.
To illustrate RepExplore's features and the results obtainable on typical experimental data, we have applied the software to a metabolomics dataset comparing wild-type samples from the plant Arabidopsis thaliana against the mutant mapk phosphatase 1 (mkp1), which is more resistant to bacterial infection (Anderson et al., 2014, see datasets overview in the Supplementary Material).
In this section, we provide the experimental set-up of our evaluation: the datasets, an overview of the considered indistinguishability solutions (i.e., TrackMeNot and GooPIR), and both the evaluation metrics and the concurrent approaches we use to assess the performance of SimAttack.
Given the scope of the proteomic datasets, our overview-style analysis was also necessarily very broad and coarse-grained.
An application to a sample dataset and an overview on up-to-date applications of the approach and of the tool shows the development potential of such analyses.
The examination of the differing hashtags in the dataset gives an overview of the current debate on NCDs on Twitter, precisely about the other topics that have been discussed while using the hashtag #ncds.
For illustration purposes, NetMatchStar has been tested on a biological dataset and an overview of its performance concludes the paper.
Overview datasets and references included in the meta-analysis.
Digital expression analyses of these datasets provide an overview of metabolic changes and specific pathways that are regulated under stress conditions in wheat and other cereals.
To demonstrate CNVineta's compatibility with large datasets, a regional overview of the proximal part of the chromosome 15q region (13 Mb) in 1587 samples is shown in the Supplementary Figure S1.
