Sentence examples for dataset of length from inspiring English sources
The likelihood at all sites with pattern x in a dataset of size N was then calculated as
A 6-taxa dataset of length 1000 bp and a 15-taxa dataset of length 3000 bp were both generated using the program SeqGen of Rambaut and Grassly (1997).
All query datasets of length below 100 bp are allowed to have one error (mismatch or indel) while others are allowed to have two errors.
To demonstrate the use of the program for testing tree reconstruction accuracy for datasets containing a change in the proportion of variable sites, the JC model was used to generate 100 datasets of length 10,000 bp on the 4-taxon rooted balanced tree shown in Figure 3.
A similar trend was observed for another dataset of read length 100 bp (Supplementary Fig. S4b).
To further explore this possibility I compiled an extensive dataset of full length snake venom PLA2 genes from public databases, inferred the gene trees for these toxins and tested for episodes of positive Darwinian selection coincident with the origin of novel pharmacological effects and recurrent diversifying selection on specific sites.
The leave-one-out method is known to be an almost unbiased estimation of the true generalization error; that is, the performance reported with the leave-one-out method is the most similar to the performance this system would show on an unseen test dataset of infinite length once it is trained on all available data (Vapnik, 1982).
The manual filtering yielded a dataset of full-length and annotated cyclin and non-cyclin protein sequences.
We next inferred H3 variant phylogenetic trees using a dataset of full-length protein sequences from which long branching H3 variants with uncertain position were eliminated.
Selecting oil palm sequences that had a start and stop codon at a position similar to the protein sequence in GenBank resulted in a more stringent and accurate dataset of full-length ORFs.
For the dataset containing reads of length 35 bp, edit-distance based alignedit-distance based.
