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The dataset is produced by Jimeng Sun and Christos Faloutsos (CMU,Carnegie Mellon University).
The AceView gene dataset is produced from public experimental cDNA sequences from the same species.
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A concatenated alignment dataset was produced by putting each ortholog alignment in series using Bioedit v7.2.0 (Hall, 1999).
Ten years of NPP values were averaged for each pixel, and a final NPP dataset was produced (Figure 3).
The perception of 26.07, which places Candidate Y in the slowly deteriorating band is corroborated by the candidates decreasing poll numbers in the weeks after this dataset was produced.
The natural terrain elevation dataset was produced by aerial photogrammetric techniques in 2006 by IMM with a 5 m pixel size.
After the 127 ortholog concatenated alignment dataset was produced, and its model was selected as RtREV + I + G + F (gamma shape = 0.947; proportion of invariable sites = 0.063), a concatenated phylogenomic tree was calculated using both maximum likelihood and Bayesian inference methods (Fig. 4).
For quantitative performance evaluation, a ground truth dataset was produced by independent manually marking.
The KNApSAcK (KS, 08/08/22 version) dataset was produced by our group and is available online (http://kanaya.aist-nara.ac.jp/KNApSAcK/).
Records outside the boundaries of the Americas, as well as those listed as weedy or cultivated, were deleted and a final dataset was produced for analysis.
The experimental transcriptomic data used in this analysis are from Castrillo et al. 2007 [11] and the proteomic dataset was produced by Ghaemmaghami et al. 2003 [21].
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