Further, the installation of currently available software is non-trivial and steps of testing with example datasets, trying with one's own dataset, and interpreting the results require notable expertise and time.
In order to aid the administration to prioritize and to make informed decisions so as to improve the groundwater quality, it is very important to reduce the apprehensions involved in the dataset by interpreting the spatial and temporal variations in water quality (Wang et al. 2008) and also to locate hidden pollution sources (Zhang et al. 2009).
The use of LC-mass spectrometry-based metaproteomics of the protein samples extracted from archaeological specimens, and digested with trypsin, was noted as becoming feasible (Cappellini et al. 2014; van Doorn et al. 2012) because reference datasets for interpreting the peptide sequences were being developed.
Note that the Shigella results for the E. coli dataset are interpreted as true positive results, as the top three 16S hits in panel (C) are >99.8% identical, as measured by pairwise BLASTN.
The same SHs in both datasets were interpreted as TPs, and the SHs only in the phase-known dataset were considered as false negatives (FNs).
Thus, potential interactomes represent crucial datasets to interpret cell and tissue specific signaling events.
To construct PLANEX, a variety of datasets were interpreted by the IBM supercomputer Advanced Interactive eXecutive (AIX) in a supercomputing center.
We integrated these complex datasets to interpret metabolic changes associated with seed composition, highlighting as examples, the metabolism of asparagine, starch, and fatty acids.
The Westermann morphospace was useful in comparing different datasets and in interpreting ammonoid lifestyles [ 43, 44].
Nonetheless, none of them contain annotations about the P. falciparum target(s) involved, making it a challenge to elucidate the mode of action (MoA) of the compounds in the dataset, and hence, making the dataset difficult to interpret.
