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To test our conclusions on the independent data, we have conducted the correlation analysis of miRNA expression profiles with the expanded dataset from the recently published libraries [ 30].
We generated a phylogeny for the 90 species included in our main dataset from the recently published time-calibrated molecular phylogeny of all extant avian species [ 55].
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The University of Cambridge's engineering department contributed road network datasets from the late 18th century to today.
Lower and upper limits and mean of the substitution rates were obtained from an extensive N. gonorrhoeae dataset from Baltimore recently analyzed by our group [ 19].
To address these limitations, I examine an additional dataset: the recently released 2008 Collaborative Multi-racial Post-election Survey (CMPS).
A recently constructed hydrographic dataset from the Okhotsk Sea reveals a prominent freshening to depths of 500 m during the past four decades, with the maximum in the northwestern part of the sea (Ohshima et al. 2014).
HOPX expression was evaluated using the microarray dataset from Lung Genomics Research Consortium LGRCC) and the dataset from the previous reports21.
We have doubled the compendium by adding 60 new ChIP datasets from 18 recently published studies [16 33] and ENCODE murine unpublished datasets to obtain genome-wide binding patterns for 53 unique transcription factors in 15 major blood lineages and three types of leukemia (Table 1).
A representative chromosome VIII from the two parental strains (ME49 and VAND) of Toxoplasma gondii and three hybrids (see section Datasets) from a recently described genetic cross [ 9] were used to demonstrate the utility of REDHORSE on NGS datasets.
For the metabolosomes, sequences were extracted from the Dataset S1 from a recently constructed taxonomy of all BMCs.
Additionally, The Cancer Genome Atlas (TCGA) datasets from recently sequenced human basal breast cancer samples showed overexpression of DDX21 mRNA in 14/81 (17%) samples (cBioPortal).
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